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1.
Curr Biol ; 33(5): R167-R170, 2023 03 13.
Artigo em Inglês | MEDLINE | ID: mdl-36917934

RESUMO

Muñoz-Gómez and Hess introduce purple photosymbioses, which involve a heterotrophic protist host and anoxygenic photosymbionts from the phylum Proteobacteria.


Assuntos
Fotossíntese , Proteobactérias , Simbiose , Proteobactérias/fisiologia
2.
Sci Rep ; 12(1): 2006, 2022 02 07.
Artigo em Inglês | MEDLINE | ID: mdl-35132164

RESUMO

Characterization of the microbial community is essential for understanding the symbiotic relationships between microbes and host insects. Chrysomya megacephala is a vital resource, a forensic insect, a pollinator, and a vector for enteric bacteria, protozoa, helminths, and viruses. However, research on its microbial community is incomprehensive, particularly at the pupal stage, which comprises approximately half of the entire larval development stage and is important entomological evidence in forensic medicine. For the first time, this study investigated the bacterial communities of C. megacephala pupae at different ages using third-generation sequencing technology. The results showed that C. megacephala has a diverse and dynamic bacterial community. Cluster analysis at ≥ 97% similarity produced 154 operational taxonomic units (OTUs) that belonged to 10 different phyla and were distributed into 15 classes, 28 orders, 50 families, 88 genera, and 130 species. Overall, the number of bacterial OTUs increased with the development of pupae, and the relative abundance of Wolbachia in the Day5 group was significantly lower than that in the other groups. Within the pupal stage, Proteobacteria, Firmicutes, and Bacteroidetes were the dominant phyla of bacteria. At the genus level, Wolbachia and Ignatzschineria coexisted, a rarely known feature. In addition, we found Erysipelothrix rhusiopathiae, the etiological agent of swine erysipelas, which is rarely identified in insects. This study enriches the understanding of the microbial community of C. megacephala and provides a reference for better utilization and control of C. megacephala.


Assuntos
Calliphoridae/microbiologia , Microbiota , Pupa/microbiologia , Análise de Sequência de RNA/métodos , Animais , Bacteroidetes/genética , Bacteroidetes/isolamento & purificação , Bacteroidetes/fisiologia , Erysipelothrix/genética , Erysipelothrix/isolamento & purificação , Firmicutes/genética , Firmicutes/isolamento & purificação , Firmicutes/fisiologia , Entomologia Forense , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Gammaproteobacteria/fisiologia , Microbiota/genética , Microbiota/fisiologia , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Proteobactérias/fisiologia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Simbiose , Wolbachia/genética , Wolbachia/isolamento & purificação , Wolbachia/fisiologia
3.
FASEB J ; 35(6): e21682, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34042210

RESUMO

Over the last decade, multiple studies have highlighted the essential role of gut microbiota in normal infant development. However, the sensitive periods during which gut bacteria are established and become associated with physical growth and maturation of the brain are still poorly defined. This study tracked the assembly of the intestinal microbiota during the initial nursing period, and changes in community structure after transitioning to solid food in infant rhesus monkeys (Macaca mulatta). Anthropometric measures and rectal swabs were obtained at 2-month intervals across the first year of life and bacterial taxa identified by 16S rRNA gene sequencing. At 12 months of age, total brain and cortical regions volumes were quantified through structural magnetic resonance imaging. The bacterial community structure was dynamic and characterized by discrete maturational phases, reflecting an early influence of breast milk and the later transition to solid foods. Commensal microbial taxa varied with diet similar to findings in other animals and human infants; however, monkeys differ in the relative abundances of Lactobacilli and Bifidobacteria, two taxa predominant in breastfed human infants. Higher abundances of taxa in the phylum Proteobacteria during nursing were predictive of slower growth trajectories and smaller brain volumes at one year of age. Our findings define discrete phases of microbial succession in infant monkeys and suggest there may be a critical period during nursing when endogenous differences in certain taxa can shift the community structure and influence the pace of physical growth and the maturational trajectory of the brain.


Assuntos
Animais Recém-Nascidos/crescimento & desenvolvimento , Encéfalo/fisiologia , Microbioma Gastrointestinal , Leite/microbiologia , Proteobactérias/fisiologia , Animais , Encéfalo/microbiologia , Dieta , Fezes/microbiologia , Feminino , Macaca mulatta , Masculino
4.
Food Microbiol ; 92: 103600, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32950141

RESUMO

This study evaluated the application of a Halobacteriovorax isolated from water of the Adriatic Sea (Italy) in controlling V. parahaemolyticus in mussels (Mytilus galloprovincialis). Two 72 h laboratory-scale V. parahaemolyticus decontamination experiments of mussels were performed. The test microcosm of experiment 1 was prepared using predator/prey free mussels experimentally contaminated with Halobacteriovorax/V. parahaemolyticus at a ratio of 103 PFU/105 CFU per ml, while that of experiment 2 using mussels naturally harbouring Halobacteriovorax that were experimentally contaminated with 105 CFU per ml of V. parahaemolyticus. For experiment 1, was also tested a control microcosm only contaminated with 105 CFU per ml of V. parahaemolyticus.. Double layer agar plating and pour plate techniques were used to enumerate Halobacteriovorax and V. parahaemolyticus, respectively. 16 S rRNA analysis was used to identify Halobacteriovorax. For both experiments in the test microcosm the concentration of prey remained at the same level as that experimentally added, i.e. 5 log for the entire analysis period. In experiment 1, V. parahaemolyticus counts in mussels were significantly lower in the test microcosm than the control with the maximum difference of 2.2 log at 24 h. Results demonstrate that Halobacteriovorax can modulate V. parahaemolyticus level in the mussels. The public impact of V. parahaemolyticus in bivalves is relevant and current decontamination processes are not always effective. Halobacteriovorax is a suitable candidate in the development of a biological approach to the purification of V. parahaemolyticus in mussels.


Assuntos
Mytilus/microbiologia , Proteobactérias/fisiologia , Água do Mar/microbiologia , Frutos do Mar/microbiologia , Vibrio parahaemolyticus/crescimento & desenvolvimento , Animais , Antibiose , Microbiologia de Alimentos , Oceanos e Mares , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Vibrio parahaemolyticus/fisiologia
5.
Sci Rep ; 10(1): 13729, 2020 08 13.
Artigo em Inglês | MEDLINE | ID: mdl-32792530

RESUMO

Continuous cropping of tomato is increasingly practiced in greenhouse cultivation, leading to several soil-related obstacles. In this study, a type of microbial restoration substrate (MRS) was used to amend soils from the re-cropping of tomato for 8 years under greenhouse-cultivated conditions. Two treatments were established: using 1,500 kg hm-2 of MRS to amend soil as treatment (TR), and non-MRS as control (CK). The severity of bacterial wilt (BW), soil properties and rhizobacterial community composition under two different treatments were compared. The application of MRS led to an average 83.75% reduction in the severity of BW, and significantly increased the plant height, root activity and yield. Meanwhile, soil pH, soil organic contents (SOC), total nitrogen (TN) and exchangeable calcium were significantly increased (P < 0.05) by MRS treatment. Illumina-MiSeq sequencing analysis of the 16S rRNA genes revealed that MRS increased the diversity of the tomato rhizobacterial community. The relative abundances of Proteobacteria, Actinobacteria and Bacteroidetes were enhanced, whereas those of Acidobacteria, Chloroflexi, TM7 and Firmicutes were decreased by MRS. The redundancy analysis (RDA) revealed that the severity of tomato BW was negatively correlated with the relative abundances of Actinobacteria, Bacteroidetes and Proteobacteria, but positively correlated with those of Gemmatimonadetes, Firmicutes and Acidobacteria. In addition, the effects of MRS on rhizobacterial metabolic potentials were predicted using a Kyoto Encyclopedia of Genes and Genomes (KEGG) database, implying that MRS could significantly increase nitrogen metabolisms and reduce carbon metabolism. Together, our results indicated that the use of MRS could reestablish soil microbial communities, which was beneficial to plant health compared with the control.


Assuntos
Microbiota/fisiologia , Desenvolvimento Vegetal/efeitos dos fármacos , Solanum lycopersicum/crescimento & desenvolvimento , Solanum lycopersicum/microbiologia , Acidobacteria/genética , Acidobacteria/fisiologia , Actinobacteria/genética , Actinobacteria/fisiologia , Bactérias/genética , Biodiversidade , Carbono/metabolismo , Microbiota/genética , Nitrogênio/metabolismo , Proteobactérias/genética , Proteobactérias/fisiologia , RNA Ribossômico 16S/genética , Rizosfera , Solo/química , Microbiologia do Solo
6.
Arch Microbiol ; 202(10): 2629-2642, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32710156

RESUMO

Here we analyze the microbial community of healthy and diseased tomato plants to evaluate its impact on plant health. The organisms found in all samples mainly belonged to 4 phyla: Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria. The Proteobacteria were the highest relative abundant within the endophytic communities of different plant organs of diseased tomato. Among endophytic bacteria of tomato, only a few taxa could be cultured. Here we showed that only a few taxa of bacteria inhabiting tomato plants could be cultured and that all plant organs have a highly diverse endophytic bacterial, whose activity might affect plant growth and development as well as health. The roots seem to be an important barrier for microbes and leaves appear to be the organs with the higher diversity which is incidentally related to plant health. Fruits also contain a complex bacterial community that appeared to be unaffected by foliar diseases such as gray leaf spot at least under the conditions studied.


Assuntos
Fenômenos Fisiológicos Bacterianos , Microbiota/fisiologia , Doenças das Plantas/microbiologia , Solanum lycopersicum/microbiologia , Actinobacteria/fisiologia , Bactérias/classificação , Bacteroidetes/fisiologia , Endófitos/classificação , Firmicutes/fisiologia , Desenvolvimento Vegetal , Raízes de Plantas/microbiologia , Proteobactérias/fisiologia
7.
Nutrients ; 12(7)2020 Jul 09.
Artigo em Inglês | MEDLINE | ID: mdl-32660025

RESUMO

Early treatment may prevent or delay the onset of type 2 diabetes mellitus (T2DM) in individuals who are at high risk. Lifestyle interventions and the hypoglycemic drug metformin have been shown to reduce T2DM incidence. The effectiveness of such interventions may be enhanced by targeting environmental factors such as the intestinal microbiota, which has been proven to predict the response to lifestyle interventions and play a part in mediating the glucose-lowering effects of metformin. Shifts in the intestinal microbiota "towards a more balanced state" may promote glucose homeostasis by regulating short-chain fatty acids' production. This study aimed to investigate the safety and effect of a multi-strain probiotic on glycemic, inflammatory, and permeability markers in adults with prediabetes and early T2DM and to assess whether the probiotic can enhance metformin's effect on glycaemia. A randomised controlled pilot study was conducted in 60 adults with a BMI ≥ 25 kg/m2 and with prediabetes or T2DM (within the previous 12 months). The participants were randomised to a multi-strain probiotic (L. plantarum, L. bulgaricus, L. gasseri, B. breve, B. animalis sbsp. lactis, B. bifidum, S. thermophilus, and S. boulardii) or placebo for 12 weeks. Analyses of the primary outcome (fasting plasma glucose) and secondary outcomes, including, but not limited to, circulating lipopolysaccharide, zonulin, and short chain fatty acids and a metagenomic analysis of the fecal microbiome were performed at baseline and 12 weeks post-intervention. The results showed no significant differences in the primary and secondary outcome measures between the probiotic and placebo group. An analysis of a subgroup of participants taking metformin showed a decrease in fasting plasma glucose, HbA1c, insulin resistance, and zonulin; an increase in plasma butyrate concentrations; and an enrichment of microbial butyrate-producing pathways in the probiotic group but not in the placebo group. Probiotics may act as an adjunctive to metformin by increasing the production of butyrate, which may consequently enhance glucose management.


Assuntos
Glicemia/análise , Diabetes Mellitus Tipo 2/sangue , Microbioma Gastrointestinal , Hipoglicemiantes/administração & dosagem , Metformina/administração & dosagem , Probióticos/administração & dosagem , Idoso , Bacteroidetes/fisiologia , Butiratos/sangue , Ácidos Graxos Voláteis/sangue , Feminino , Firmicutes/fisiologia , Microbioma Gastrointestinal/efeitos dos fármacos , Haptoglobinas , Humanos , Resistência à Insulina , Masculino , Redes e Vias Metabólicas/efeitos dos fármacos , Pessoa de Meia-Idade , Projetos Piloto , Estado Pré-Diabético/sangue , Probióticos/efeitos adversos , Probióticos/farmacologia , Precursores de Proteínas/sangue , Proteobactérias/fisiologia
8.
Sci Rep ; 10(1): 9203, 2020 06 08.
Artigo em Inglês | MEDLINE | ID: mdl-32514187

RESUMO

The rhizospheric microbial community is one of the major environmental factors affecting the distribution and fitness of plants. Ancient wild tea plants are rare genetic resource distributed in Southwest China. In this study, we investigated that rhizospheric bacterial communities of ancient wild tea plants along the elevational gradients (2050, 2200, 2350 and 2500 m) in QianJiaZhai Reserve of Ailao Mountains. According to the Illumina MiSeq sequencing of 16 S rRNA gene amplicons, Proteobacteria, Acidobacteria and Actinobacteria were the dominant phyla with the relative abundance 43.12%, 21.61% and 14.84%, respectively. The Variibacter was the most dominant genus in rhizosphere of ancient wild tea plant. Phylogenetic null modeling analysis suggested that rhizospheric bacterial communities of ancient wild tea plants were more phylogenetically clustered than expected by chance. The bacterial community at 2050 m was unique with the highest alpha diversity, tend to cluster the nearest taxon and simple co-occurrence network structure. The unique bacterial community was correlated to multiple soil factors, and the content soil ammonium nitrogen (NH4+-N) was the key factor affecting the diversity and distribution of bacterial community along the elevational gradients. This study provided the necessary basic information for the protection of ancient tea trees and cultivation of tea plants.


Assuntos
Bactérias/crescimento & desenvolvimento , Microbiota/fisiologia , Raízes de Plantas/microbiologia , Chá/microbiologia , Acidobacteria/genética , Acidobacteria/crescimento & desenvolvimento , Actinobacteria/genética , Actinobacteria/crescimento & desenvolvimento , Bactérias/genética , Biodiversidade , China , Florestas , Nitrogênio/metabolismo , Filogenia , Plantas/microbiologia , Proteobactérias/genética , Proteobactérias/fisiologia , RNA Ribossômico 16S/genética , Rizosfera , Solo , Microbiologia do Solo
9.
Clin Transl Gastroenterol ; 11(2): e00126, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-32463624

RESUMO

OBJECTIVES: To summarize the literature on the influence of exercise on the gut microbiota of healthy adults. METHODS: A systematic and comprehensive search in electronic database, including SciELO, Scopus, PubMed, and Web of Science up to July 5, 2019. Eligibility criterion was original studies conducted on healthy humans including exercise interventions or interventions involving any type of physical activity. RESULTS: The initial search retrieved 619 articles of which 18 met the inclusion criteria, 9 were observational, 4 reported very short-term exercise interventions, and 5 reported medium/long-term exercise interventions. Higher levels of physical activity or cardiorespiratory fitness were positively associated with fecal bacterial alpha diversity. Contrasting associations were detected between both the level of physical activity and cardiorespiratory fitness and fecal counts for the phyla Firmicutes, Bacteroidetes, and Proteobacteria. Higher levels of physical activity and cardiorespiratory fitness were positively associated with the fecal concentration of short-chain fatty acids. Reports on the effects of very short-term and medium/long-term exercise interventions on the composition of the gut microbiota were inconsistent. DISCUSSION: Higher levels of physical activity and cardiorespiratory fitness are associated with higher fecal bacterial alpha diversity and with the increased representation of some phyla and certain short-chain fatty acids in the feces of healthy adults. Very short-term and medium/long-term exercise interventions seem to influence the fecal counts of some phyla. However, the heterogeneity between studies hampers any strong conclusions from being drawn. Better-designed studies are needed to unravel the possible mechanisms through which exercise might influence the composition and activity of the human gut microbiota.


Assuntos
Exercício Físico/fisiologia , Microbioma Gastrointestinal/fisiologia , Bacteroidetes/isolamento & purificação , Bacteroidetes/fisiologia , Aptidão Cardiorrespiratória/fisiologia , Ensaios Clínicos como Assunto , Fezes/microbiologia , Firmicutes/isolamento & purificação , Firmicutes/fisiologia , Voluntários Saudáveis , Humanos , Estudos Observacionais como Assunto , Proteobactérias/isolamento & purificação , Proteobactérias/fisiologia
10.
Anim Sci J ; 91(1): e13374, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32378282

RESUMO

Superovulation is an important animal breeding biotechnology, while the quality of embryos obtained from superovulation is unstable in cattle. The relationship between the microorganisms in the cattle uterus and embryo qualities was determined to identify the key bacterial populations affecting early embryonic development. A total of 10 Xia Nan cows underwent superovulation, we collected cervical mucus and flush samples to investigated by 16S rDNA sequencing. Results showed that there were abundant microorganisms in cervical mucus, but no obvious relationship with the quality of embryos. The clustering results of flush samples were consistent with the grouping of embryo quality. Proteobacteria accounted for more than 95% of the total bacterial community in group A with the best embryo quality (qualified embryo ratio above 0.8), and as embryo quality decreased, the Proteobacteria proportion also decreased. In contrast to the proportion of Proteobacteria, the proportions of Firmicutes and Bacteroidetes significantly increased as embryo quality decreased. For group C with the worst embryo quality, the proportions of Firmicutes and Bacteroidetes increased to 4.7 times and 12.3 times of group A, respectively. These results showed that the quantities and proportions of Firmicutes and Bacteroidetes may be related to early embryonic development in cattle.


Assuntos
Bovinos/fisiologia , Embrião de Mamíferos , Desenvolvimento Embrionário/fisiologia , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Superovulação , Útero/microbiologia , Animais , Endométrio/microbiologia , Feminino , Firmicutes/genética , Firmicutes/isolamento & purificação , Firmicutes/fisiologia , Gravidez , Proteobactérias/fisiologia , Análise de Sequência de DNA
11.
Arch Microbiol ; 202(7): 1763-1773, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32350549

RESUMO

To observe the temporal shifts of the intestinal microbial community structure and diversity in rats for 30 days after death. Rectal swabs were collected from rats before death (BD) and on day 1, 5, 10, 15, 20, 25, and 30 after death (AD). Bacteria genomic DNA was extracted and V3 + V4 regions of 16S rRNA gene were amplified by PCR. The amplicons were sequenced at Illumina MiSeq sequencing platform. The bacterial diversity and richness showed similar results from day 1 to 5 and day 10 to 25 all presenting downtrend, while from day 5 to 10 showed slightly increased. The relative abundance of Firmicutes and Proteobacteria displayed inverse variation in day 1, 5, 10 and that was the former decreased, the latter increased. Bacteroidetes, Spirochaete and TM7 in day 15, 20, 25, 30 was significantly decline comparing with BD. Enterococcus and Proteus displayed reduced trend over day 1, 5, 10 and day 10, 15, 20, 25, respectively, while Sporosarcina showed obvious elevation during day 15, 20, 25. Accordingly, there was a certain correlation between intestinal flora succession and the time of death. The results suggested that intestinal flora may be potential indicator to aid estimation of post-mortem interval (PMI).


Assuntos
Fenômenos Fisiológicos Bacterianos , Microbioma Gastrointestinal/fisiologia , Microbiota , Mudanças Depois da Morte , Ratos Sprague-Dawley/microbiologia , Animais , Bactérias/genética , Bacteroidetes/fisiologia , Firmicutes/fisiologia , Sequenciamento de Nucleotídeos em Larga Escala , Microbiota/genética , Reação em Cadeia da Polimerase , Proteobactérias/fisiologia , RNA Ribossômico 16S/genética , Ratos , Fatores de Tempo
12.
Microbes Environ ; 35(1)2020.
Artigo em Inglês | MEDLINE | ID: mdl-32037377

RESUMO

Although the bioavailability of rare earth elements (REEs, including scandium, yttrium, and 15 lanthanides) has not yet been examined in detail, methane-oxidizing bacteria (methanotrophs) were recently shown to harbor specific types of methanol dehydrogenases (XoxF-MDHs) that contain lanthanides in their active site, whereas their well-characterized counterparts (MxaF-MDHs) were Ca2+-dependent. However, lanthanide dependency in methanotrophs has not been demonstrated, except in acidic environments in which the solubility of lanthanides is high. We herein report the isolation of a lanthanide-dependent methanotroph from a circumneutral environment in which lanthanides only slightly dissolved. Methanotrophs were enriched and isolated from pond sediment using mineral medium supplemented with CaCl2 or REE chlorides. A methanotroph isolated from the cerium (Ce) chloride-supplemented culture, Methylosinus sp. strain Ce-a6, was clearly dependent on lanthanide. Strain Ce-a6 only required approximately 30 nM lanthanide chloride for its optimal growth and exhibited the ability to utilize insoluble lanthanide oxides, which may enable survival in circumneutral environments. Genome and gene expression analyses revealed that strain Ce-a6 lost the ability to produce functional MxaF-MDH, and this may have been due to a large-scale deletion around the mxa gene cluster. The present results provide evidence for lanthanide dependency as a novel survival strategy by methanotrophs in circumneutral environments.


Assuntos
Genoma Bacteriano/genética , Elementos da Série dos Lantanídeos/metabolismo , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Oxirredutases do Álcool/genética , Proteínas de Bactérias/genética , Meios de Cultura/metabolismo , Sedimentos Geológicos/microbiologia , Metais Terras Raras/metabolismo , Metano/metabolismo , Methylosinus/classificação , Methylosinus/genética , Methylosinus/isolamento & purificação , Methylosinus/metabolismo , Lagoas/microbiologia , Proteobactérias/classificação , Proteobactérias/fisiologia , RNA Ribossômico 16S/genética
13.
Appl Microbiol Biotechnol ; 104(6): 2701-2714, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32002598

RESUMO

Many representatives of the Bacillus subtilis species complex are known as plant growth-promoting rhizobacteria (PGPR) and are widely used in agriculture as biofertilizers and biocontrol agents. Two bacterial strains, "Korea isolate" and ZL918, taxonomically classified as being Bacillus amyloliquefaciens, isolated from disease-damaged plant organs, were alleged to cause bacterial rot in starchy storage plant organs. The aim of this study was to elucidate whether these findings have consequences for the general use of beneficial Bacilli in agriculture. Whole genome sequencing revealed that the pathogenic ZL918 was a representative of Bacillus velezensis. B. velezensis FZB42 and other representatives of the B. subtilis species complex caused the same symptoms of bacterial rot only when injected inside of potato tubers and onion bulbs, but not when inoculated onto the surface of the storage organs. It seemed that the pathogenic effect was due to starch hydrolyzing activity that likely stimulates propagation of endophytic bacteria inside of starchy tissues. After removing the inherent microbiota via Co60 γ-ray irradiation, the storage organs inoculated by either FZB42 or purified α-amylase did not develop rot symptoms. Two opportunistic pathogens, Pantoea ananatis and Pantoea agglomerans, isolated from the rotted area, were shown to cause bacterial rot in x-ray treated potato tuber and onion starchy tissues when the proteobacteria were applied in high concentration. This suggests that opportunistic pathogenic bacteria residing inside of the starchy storage organ are the causal agents of bacterial soft rot disease in potato tubers and other starchy plant storage organs.


Assuntos
Bacillus subtilis/genética , Bacillus subtilis/patogenicidade , Desenvolvimento Vegetal , Doenças das Plantas/microbiologia , alfa-Amilases/metabolismo , Bacillus subtilis/enzimologia , Mutação , Cebolas/microbiologia , Raízes de Plantas/microbiologia , Proteobactérias/fisiologia , Solanum tuberosum/microbiologia , Sequenciamento Completo do Genoma
14.
Sci Rep ; 10(1): 2719, 2020 02 17.
Artigo em Inglês | MEDLINE | ID: mdl-32066764

RESUMO

The white leg Litopenaeus vannamei shrimp is of importance to the eastern Pacific fisheries and aquaculture industry but suffer from diseases such as the recently emerged early mortality syndrome. Many bacterial pathogens have been identified but the L. vannamei microbiota is still poorly known. Using a next-generation sequencing (NGS) approach, this work evaluated the impact of the inclusion in the diet of mannan oligosaccharide, (MOS, 0.5% w/w), over the L. vannamei microbiota and production behavior of L. vannamei under intensive cultivation in Ecuador. The MOS supplementation lasted for 60 days, after which the shrimp in the ponds were harvested, and the production data were collected. MOS improved productivity outcomes by increasing shrimp survival by 30%. NGS revealed quantitative differences in the shrimp microbiota between MOS and control conditions. In the treatment with inclusion of dietary MOS, the predominant phylum was Actinobacteria (28%); while the control group was dominated by the phylum Proteobacteria (30%). MOS has also been linked to an increased prevalence of Lactococcus- and Verrucomicrobiaceae-like bacteria. Furthermore, under the treatment of MOS, the prevalence of potential opportunistic pathogens, like Vibrio, Aeromonas, Bergeyella and Shewanella, was negligible. This may be attributable to MOS blocking the adhesion of pathogens to the surfaces of the host tissues. Together, these findings point to the fact that the performance (survival) improvements of the dietary MOS may be linked to the impact on the microbiota, since bacterial lines with pathogenic potential towards shrimps were excluded in the gut.


Assuntos
Actinobacteria/fisiologia , Aquicultura/métodos , Mananas/administração & dosagem , Microbiota , Oligossacarídeos/administração & dosagem , Penaeidae/microbiologia , Actinobacteria/classificação , Actinobacteria/isolamento & purificação , Aeromonas/isolamento & purificação , Aeromonas/patogenicidade , Ração Animal , Animais , Aderência Bacteriana , Equador , Flavobacteriaceae/isolamento & purificação , Flavobacteriaceae/patogenicidade , Lactococcus/isolamento & purificação , Lactococcus/fisiologia , Longevidade/fisiologia , Proteobactérias/classificação , Proteobactérias/isolamento & purificação , Proteobactérias/fisiologia , Alimentos Marinhos/microbiologia , Alimentos Marinhos/provisão & distribuição , Shewanella/isolamento & purificação , Shewanella/patogenicidade , Verrucomicrobia/classificação , Verrucomicrobia/isolamento & purificação , Verrucomicrobia/fisiologia , Vibrio/isolamento & purificação , Vibrio/patogenicidade
15.
ISME J ; 14(4): 1057-1062, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31969684

RESUMO

Zetaproteobacteria are obligate chemolithoautotrophs that oxidize Fe(II) as an electron and energy source, and play significant roles in nutrient cycling and primary production in the marine biosphere. Zetaproteobacteria thrive under microoxic conditions near oxic-anoxic interfaces, where they catalyze Fe(II) oxidation faster than the abiotic reaction with oxygen. Neutrophilic Fe(II) oxidizing bacteria produce copious amounts of insoluble iron oxyhydroxides as a by-product of their metabolism. Oxygen consumption by aerobic respiration and formation of iron oxyhydroxides at oxic-anoxic interfaces can result in periods of oxygen limitation for bacterial cells. Under laboratory conditions, all Zetaproteobacteria isolates have been shown to strictly require oxygen as an electron acceptor for growth, and anaerobic metabolism has not been observed. However, genomic analyses indicate a range of potential anaerobic pathways present in Zetaproteobacteria. Heterologous expression of proteins from Mariprofundus ferrooxydans PV-1, including pyruvate formate lyase and acetate kinase, further support a capacity for anaerobic metabolism. Here we define auxiliary anaerobic metabolism as a mechanism to provide maintenance energy to cells and suggest that it provides a survival advantage to Zetaproteobacteria in environments with fluctuating oxygen availability.


Assuntos
Proteobactérias/fisiologia , Água do Mar/microbiologia , Anaerobiose , Compostos Férricos , Oxirredução , Oxigênio/metabolismo , Proteobactérias/genética
16.
Microbes Environ ; 35(1)2020.
Artigo em Inglês | MEDLINE | ID: mdl-31932537

RESUMO

Vigna is a genus of legumes cultivated in specific areas of tropical countries. Species in this genus are important crops worldwide. Vigna species are of great agronomic interest in Venezuela because Vigna beans are an excellent alternative to other legumes. However, this type of crop has some cultivation issues due to sensitivity to acidic soils, high temperatures, and salinity stress, which are common in Venezuela. Vigna species establish symbioses mainly with Bradyrhizobium and Ensifer, and Vigna-rhizobia interactions have been examined in Asia, Africa, and America. However, the identities of the rhizobia associated with V. radiata and V. unguiculata in Venezuela remain unknown. In the present study, we isolated Venezuelan symbiotic rhizobia associated with Vigna species from soils with contrasting agroecosystems or from fields in Venezuela. Several types of soils were used for bacterial isolation and nodules were sampled from environments characterized by abiotic stressors, such as high temperatures, high concentrations of NaCl, and acidic or alkaline pH. Venezuelan Vigna-rhizobia were mainly fast-growing. Sequencing of several housekeeping genes showed that in contrast to other continents, Venezuelan Vigna species were nodulated by rhizobia genus including Burkholderia, containing bacteria from several new phylogenetic lineages within the genus Bradyrhizobium. Some Rhizobium and Bradyrhizobium isolates were tolerant of high salinity and Al toxicity. The stress tolerance of strains was dependent on the type of rhizobia, soil origin, and cultivation history. An isolate classified as R. phaseoli showed the highest plant biomass, nitrogen fixation, and excellent abiotic stress response, suggesting a novel promising inoculant for Vigna cultivation in Venezuela.


Assuntos
Filogenia , Proteobactérias/classificação , Proteobactérias/fisiologia , Microbiologia do Solo , Simbiose , Vigna/microbiologia , DNA Bacteriano/genética , Genes Bacterianos/genética , Fixação de Nitrogênio/genética , Proteobactérias/genética , Proteobactérias/isolamento & purificação , RNA Ribossômico 16S/genética , Nódulos Radiculares de Plantas/microbiologia , Análise de Sequência de DNA , Solo/química , Estresse Fisiológico , Venezuela , Vigna/crescimento & desenvolvimento
17.
FASEB J ; 34(3): 3983-3995, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31957074

RESUMO

BACKGROUND AND AIMS: Intestinal adaptation in short bowel syndrome (SBS) includes morphologic processes and functional mechanisms. This study investigated whether digestive enzyme expression in the duodenum and colon is upregulated in SBS patients. METHOD: Sucrase-isomaltase (SI), lactase-phlorizin hydrolase (LPH), and neutral Aminopeptidase N (ApN) were analyzed in duodenal and colonic biopsies from nine SBS patients in a late stage of adaptation as well as healthy and disease controls by immunoelectron microscopy (IEM), Western blots, and enzyme activities. Furthermore, proliferation rates and intestinal microbiota were analyzed in the mucosal specimen. RESULTS: We found significantly increased amounts of SI, LPH, and ApN in colonocytes in most SBS patients with large variation and strongest effect for SI and ApN. Digestive enzyme expression was only partially elevated in duodenal enterocytes due to a low proliferation level measured by Ki-67 staining. Microbiome analysis revealed high amounts of Lactobacillus resp. low amounts of Proteobacteria in SBS patients with preservation of colon and ileocecal valve. Colonic expression was associated with a better clinical course in single cases. CONCLUSION: In SBS patients disaccharidases and peptidases can be upregulated in the colon. Stimulation of this colonic intestinalization process by drugs, nutrients, and pre- or probiotics might offer better therapeutic approaches.


Assuntos
Intestino Grosso/enzimologia , Síndrome do Intestino Curto/enzimologia , Aminopeptidases/metabolismo , Western Blotting , Dissacaridases/metabolismo , Feminino , Humanos , Lactase-Florizina Hidrolase/metabolismo , Lactobacillus/fisiologia , Masculino , Microscopia Imunoeletrônica , Peptídeo Hidrolases/metabolismo , Proteobactérias/fisiologia , Complexo Sacarase-Isomaltase/metabolismo
18.
J Hazard Mater ; 385: 121617, 2020 03 05.
Artigo em Inglês | MEDLINE | ID: mdl-31740298

RESUMO

Propagation of emerging pollutants (EPs) in wastewater treatment plants has become a warning sign, especially for novel resource-recovery concepts. The fate of EPs on purple phototrophic bacteria (PPB)-based systems has not yet been determined. This work analyzes the performance of a photo-anaerobic membrane bioreactor treating a low-N wastewater contaminated with 25 EPs. The chemical oxygen demand (COD), N and P removal efficiencies were stable (76 ±â€¯8, 62 ±â€¯15 and 36 ±â€¯8 %, respectively) for EPs loading rate ranging from 50 to 200 ng L-1 d-1. The PPB community adapted to changes in both the EPs concentration and the organic loading rate (OLR) and maintained dominance with >85 % of total 16S gene copies. Indeed, an increment of the OLR caused an increase of the biomass growth and activity concomitantly with a higher EPs removal efficiency (30 ±â€¯13 vs 54 ±â€¯11 % removal for OLR of 307 ±â€¯4 and 590 ±â€¯8 mgCOD L-1 d-1, respectively). Biodegradation is the main mechanism of EPs removal due to low EPs accumulation on the biomass, the membrane or the reactor walls. Low EPs adsorption avoided biomass contamination, resulting in no effect on its biological methane potential. These results support the use of PPB technologies for resource recovery with low EPs contamination of the products.


Assuntos
Proteobactérias/efeitos dos fármacos , Águas Residuárias/química , Poluentes Químicos da Água/toxicidade , Compostos de Amônio/análise , Anaerobiose , Biomassa , Reatores Biológicos , Membranas Artificiais , Proteobactérias/fisiologia , Poluentes Químicos da Água/análise , Purificação da Água/métodos
19.
Bioelectrochemistry ; 129: 179-188, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31195329

RESUMO

The main objective of this study was to understand the interaction between salinity, temperature and inoculum size and how it could lead to the formation of efficient halothermotolerant bioanodes from the Hypersaline Sediment of Chott El Djerid (HSCE). Sixteen experiments on bioanode formation were designed using a Box-Behnken matrix and response surface methodology to understand synchronous interactions. All bioanode formations were conducted on 6 cm2 carbon felt electrodes polarized at -0.1 V/SCE and fed with lactate (5 g/L) at pH 7.0. Optimum levels for salinity, temperature and inoculum size were predicted by NemrodW software as 165 g/L, 45 °C and 20%, respectively, under which conditions maximum current production of 6.98 ±â€¯0.06 A/m2 was experimentally validated. Metagenomic analysis of selected biofilms indicated a relative abundance of the two phyla Proteobacteria (from 85.96 to 89.47%) and Firmicutes (from 61.90 to 68.27%). At species level, enrichment of Psychrobacter aquaticus, Halanaerobium praevalens, Psychrobacter alimentaris, and Marinobacter hydrocarbonoclasticus on carbon-based electrodes was correlated with high current production, high salinity and high temperature. Members of the halothermophilic bacteria pool from HSCE, individually or in consortia, are candidates for designing halothermotolerant bioanodes applicable in the bioelectrochemical treatment of industrial wastewater at high salinity and temperature.


Assuntos
Fontes de Energia Bioelétrica/microbiologia , Firmicutes/fisiologia , Proteobactérias/fisiologia , Biofilmes , Eletrodos/microbiologia , Desenho de Equipamento , Firmicutes/genética , Firmicutes/isolamento & purificação , Genômica , Proteobactérias/genética , Proteobactérias/isolamento & purificação , Salinidade , Temperatura
20.
Bioelectrochemistry ; 128: 118-125, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30978518

RESUMO

Nitinols (Nickel-titanium alloys) have a good electrical conductivity and biocompatibility with human tissue and bacteria and, therefore, can be effectively used as an anode material in bioelectrochemical systems. This paper aimed to use nitinols (at different Ni/Ti ratios) as an anode material for microbial fuel cells (MFCs) in order to achieve higher power density. The maximum power densities of the MFCs using NiTi-1, NiTi-2, and NiTi-3 electrodes were 555 mW/m2, 811 mW/m2, and 652 mW/m2, respectively. More bacterial adhesion was observed on the NiTi-2 electrode. Electrochemical impedance spectroscopy (EIS) results showed low charge transfer resistance at MFCs fabricated with NiTi. The biofilm observations indicate that bacterial attachment is better with NiTi-2 as compared with that on NiTi-1 and NiTi-3. The resulting mesopore and macropore rich structure significantly promote microbial colonization, enabling formation of compact electroactive biofilms with additional benefit from the excellent biocompatibility and chemical stability of NiTi-2. Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis (PCR-DGGE) results indicated that five groups of bacteria were the dominant phyla in the MFCs: environmental samples, b-proteobacteria, g-proteobacteria, d-proteobacteria, and CFB group bacteria. The high biocompatibility, electrical conductivity and stability of nitinols make them a more attractive anode material for MFCs.


Assuntos
Ligas/farmacologia , Fontes de Energia Bioelétrica , Eletrodos , Aderência Bacteriana , Biofilmes , Eletroforese em Gel de Gradiente Desnaturante/métodos , Espectroscopia Dielétrica , Condutividade Elétrica , Microscopia Eletrônica de Varredura , Reação em Cadeia da Polimerase/métodos , Proteobactérias/classificação , Proteobactérias/fisiologia , Propriedades de Superfície
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